OCA Atlas for 1T1H

1T1H

Ligase

date

Apr 16, 2004

title

Nmr Solution Structure Of The U Box Domain From Atpub14, An Repeat Containing Protein From Arabidopsis Thaliana

authors

P.Andersen, B.B.Kragelund, A.N.Olsen, F.H.Larsen, N.H.Chua, F.M. K.Skriver

compound

source

Molecule: Armadillo Repeat Containing Protein
Chain: A
Fragment: U-Box Domain (249-321)
Synonym: Gspef-Atpub14
Engineered: Yes

Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1

method

Solution NMR

note

1T1H is a representative structure

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Structure and biochemical function of a prototypical arabidopsis U-box domain., Andersen P, Kragelund BB, Olsen AN, Larsen FH, Chua NH, Poulsen FM, Skriver K, J Biol Chem 2004 Jun 30;. PMID:15231834

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (411 Kb) [Save to disk]

Biological Unit Coordinates (1t1h.pdb1.gz) 20 Kb

CSU: Contacts of Structural Units for 1T1H

Original NMR restraints for 1T1H from PDB

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1T1H in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1T1H from S2C, [Save to disk]

View 1T1H in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1T1H

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1T1H, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1t1ha_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1t1h] [1t1h_A]

SWISS-PROT database: [Q8VZ40]

Domain organization of [PUB14_ARATH] by SWISSPFAM

Domain found in 1T1H: [Ubox ] by SMART

Other resources with information on 1T1H

Community annotation for 1T1H at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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