1T1M Ribosome date Apr 16, 2004
title Binding Position Of Ribosome Recycling Factor (Rrf) On The E Ribosome
authors R.K.Agrawal, M.R.Sharma, M.C.Kiel, G.Hirokawa, T.M.Booth, C.M.Spa R.A.Grassucci, A.Kaji, J.Frank
compound source
Molecule: Dodecamer Fragment Of Double Helix From 23s Rrna
Chain: A
Fragment: Apical Loop Of Helix 43
Other_details: Fitted Into The Cryo-Em Map Of The 70s Ribos
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 42-Mer Fragment Of Double Helix From 16s Rrna
Chain: B
Fragment: Top Portion Of Helix 44
Other_details: Fitted Into The Cryo-Em Map Of The 70s Ribos
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: Ribosome Recycling Factor
Chain: C
Synonym: Ribosome Releasing Factor; Rrf
Other_details: Fitted Into The Cryo-Em Map Of The 70s Ribos
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
Other_details: Sequence Taken From Thermotoga Maritima
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 12.00 Å
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceVisualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications., Agrawal RK, Sharma MR, Kiel MC, Hirokawa G, Booth TM, Spahn CM, Grassucci RA, Kaji A, Frank J, Proc Natl Acad Sci U S A 2004 Jun 15;101(24):8900-5. Epub 2004 Jun 3. PMID:15178758
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (1t1m.pdb1.gz) 6 Kb
  • CSU: Contacts of Structural Units for 1T1M
  • Likely Quarternary Molecular Structure file(s) for 1T1M
  • Retrieve 1T1M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T1M from S2C, [Save to disk]
    • View 1T1M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1T1M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T1M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t1ma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1t1mb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1t1mc_, region C [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t1m_C] [1t1m_A] [1t1m] [1t1m_B]
  • SWISS-PROT database: [P84154]
  • Domain organization of [P84154_ECOLX] by SWISSPFAM
    • Other resources with information on 1T1M
  • Community annotation for 1T1M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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