1T3L Transport Protein date Apr 27, 2004
title Structural Analysis Of The Voltage-Dependent Calcium Channel Subunit Functional Core In Complex With Alpha1 Interaction
authors Y.Opatowsky, C.C.Chen, K.P.Campbell, J.A.Hirsch
compound source
Molecule: Dihydropyridine-Sensitive L-Type, Calcium Channel Subunit;
Chain: A
Fragment: Functional Core (Residues 25-422)
Synonym: Voltage-Dependent Calcium Channel Beta-2 Subunit,
Engineered: Yes
Mutation: Yes
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Gene: Cacnb2, Cacnlb2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21

Molecule: Voltage-Dependent L-Type Calcium Channel Alpha-1s
Chain: B
Fragment: Aid
Synonym: Calcium Channel, L Type, Alpha-1 Polypeptide, Isof Skeletal Muscle;
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is From Oryctolagus Cuniculus (Rabbit) Gene
symmetry Space Group: P 21 21 2
R_factor 0.221 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.775 168.262 34.233 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 1T0J, 1VYU
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of the voltage-dependent calcium channel beta subunit functional core and its complex with the alpha 1 interaction domain., Opatowsky Y, Chen CC, Campbell KP, Hirsch JA, Neuron 2004 May 13;42(3):387-99. PMID:15134636
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1t3l.pdb1.gz) 53 Kb
  • CSU: Contacts of Structural Units for 1T3L
  • Likely Quarternary Molecular Structure file(s) for 1T3L
  • Retrieve 1T3L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T3L from S2C, [Save to disk]
  • View 1T3L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T3L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T3L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t3la2, region A:218-415 [Jmol] [rasmolscript] [script source]
        - Domain d1t3la1, region A:35-141 [Jmol] [rasmolscript] [script source]
        - Domain d1t3lb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t3l_A] [1t3l] [1t3l_B]
  • SWISS-PROT database: [P07293] [P54288]
  • Belongs to the voltage-gated ion channel (vic) superfamily according to TCDB.
  • Domain organization of [CAC1S_RABIT] [CACB2_RABIT] by SWISSPFAM
  • Domains found in 1T3L: [GuKc] [SH3 ] by SMART
  • Other resources with information on 1T3L
  • Community annotation for 1T3L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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