1T4F	Ligase	date	Apr 29, 2004
title	Structure Of Human Mdm2 In Complex With An Optimized P53 Pep
authors	B.L.Grasberger, C.Schubert, H.K.Koblish, T.E.Carver, C.F.Franks, T.Lu, L.V.Lafrance, D.J.Parks
compound		source
Molecule: Ubiquitin-Protein Ligase E3 Mdm2 Chain: M Synonym: P53-Binding Protein Mdm2, Oncoprotein Mdm2, Double Protein, Hdm2; Ec: 6.3.2.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mdm2 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Pgex4t-3
Molecule: Optimized P53 Peptide Chain: P Engineered: Yes
symmetry	Space Group: P 21 21 21	R_factor 0.197 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.030 43.590 54.570 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	SO4	enzyme	Ligase E.C.6.3.2 BRENDA
related structures	by homologous chain: 1YCQ
Gene Ontology	Chain Function Process Component M
Primary reference	Discovery and cocrystal structure of benzodiazepinedione HDM2 antagonists that activate p53 in cells., Grasberger BL, Lu T, Schubert C, Parks DJ, Carver TE, Koblish HK, Cummings MD, LaFrance LV, Milkiewicz KL, Calvo RR, Maguire D, Lattanze J, Franks CF, Zhao S, Ramachandren K, Bylebyl GR, Zhang M, Manthey CL, Petrella EC, Pantoliano MW, Deckman IC, Spurlino JC, Maroney AC, Tomczuk BE, Molloy CJ, Bone RF, J Med Chem 2005 Feb 24;48(4):909-12. PMID:15715460

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk] Biological Unit Coordinates (1t4f.pdb1.gz) 18 Kb LPC: Ligand-Protein Contacts for 1T4F CSU: Contacts of Structural Units for 1T4F Likely Quarternary Molecular Structure file(s) for 1T4F Structure Factors (83 Kb) Retrieve 1T4F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1T4F from S2C, [Save to disk] Re-refined 1t4f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1T4F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1T4F

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1T4F, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1t4f] [1t4f_P] [1t4f_M] SWISS-PROT database: [Q00987] Domain organization of [MDM2_HUMAN] by SWISSPFAM

Other resources with information on 1T4F

Community annotation for 1T4F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---