1T5I Pre-Mrna Processing Protein date May 04, 2004
title Crystal Structure Of The C-Terminal Domain Of Uap56
authors R.Zhao, M.R.Green, J.Shen
compound source
Molecule: C_terminal Domain Of A Probable Atp-Dependent Rna
Chain: A
Fragment: C-Terminal Domain (Residues 259-428)
Synonym: U2af65 Associated Protein 56, Uap56
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bat1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xa90
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Kg
symmetry Space Group: P 43
R_factor 0.224 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.582 33.582 119.075 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
Primary referenceCrystal structure of UAP56, a DExD/H-box protein involved in pre-mRNA splicing and mRNA export., Zhao R, Shen J, Green MR, MacMorris M, Blumenthal T, Structure (Camb) 2004 Aug;12(8):1373-81. PMID:15296731
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1t5i.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1T5I
  • Likely Quarternary Molecular Structure file(s) for 1T5I
  • Structure Factors (159 Kb)
  • Retrieve 1T5I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T5I from S2C, [Save to disk]
  • Re-refined 1t5i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1T5I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T5I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T5I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t5ia_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t5i_A] [1t5i]
  • SWISS-PROT database: [Q13838]
  • Belongs to the nuclear mrna exporter (mrna-e) family according to TCDB.
  • Domain organization of [UAP56_HUMAN] by SWISSPFAM
  • Domain found in 1T5I: [HELICc ] by SMART
  • Other resources with information on 1T5I
  • Community annotation for 1T5I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science