1T7V Lipid Binding Protein date May 11, 2004
title Zn-Alpha-2-Glycoprotein; Baculo-Zag Peg 200
authors S.L.Delker, A.P.West Jr., L.Mcdermott, M.W.Kennedy, P.J.Bjorkman
compound source
Molecule: Zinc-Alpha-2-Glycoprotein
Chain: A
Synonym: Zn-Alpha-2-Glycoprotein, Zn-Alpha-2-Gp
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Azgp1, Zag, Zngp1
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pvl1393
symmetry Space Group: P 43 21 2
R_factor 0.214 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.878 122.878 65.227 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand NAG, P6G enzyme
related structures by homologous chain: 1T80
Gene
Ontology
ChainFunctionProcessComponent
A
  • ribonuclease activity
  • protein transmembrane transp...


  • Primary referenceCrystallographic studies of ligand binding by Zn-alpha2-glycoprotein., Delker SL, West AP Jr, McDermott L, Kennedy MW, Bjorkman PJ, J Struct Biol 2004 Nov;148(2):205-13. PMID:15477100
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1t7v.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 1T7V
  • CSU: Contacts of Structural Units for 1T7V
  • Likely Quarternary Molecular Structure file(s) for 1T7V
  • Structure Factors (527 Kb)
  • Retrieve 1T7V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T7V from S2C, [Save to disk]
  • Re-refined 1t7v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1T7V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T7V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T7V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t7va1, region A:184-277 [Jmol] [rasmolscript] [script source]
        - Domain d1t7va2, region A:5-183 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t7v_A] [1t7v]
  • SWISS-PROT database: [P25311]
  • Domain organization of [ZA2G_HUMAN] by SWISSPFAM
  • Domain found in 1T7V: [IGc1 ] by SMART
  • Other resources with information on 1T7V
  • Community annotation for 1T7V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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