1T8C Immune System date May 12, 2004
title Structure Of The C-Type Lectin Domain Of Cd23
authors R.G.Hibbert, P.Teriete, G.J.Grundy, B.J.Sutton, H.J.Gould, J.M.Mc
compound source
Molecule: Low Affinity Immunoglobulin Epsilon Fc Receptor
Chain: A
Fragment: Dercd23
Synonym: Lymphocyte Ige Receptor, Fc-Epsilon-Rii, Cd23, Immunoglobulin E-Binding Factor;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fcer2, Igebf
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet5a
methodSolution NMR
Primary referenceThe structure of human CD23 and its interactions with IgE and CD21., Hibbert RG, Teriete P, Grundy GJ, Beavil RL, Reljic R, Holers VM, Hannan JP, Sutton BJ, Gould HJ, McDonnell JM, J Exp Med 2005 Sep 19;202(6):751-60. PMID:16172256
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (732 Kb) [Save to disk]
  • Biological Unit Coordinates (1t8c.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1T8C
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1T8C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T8C from S2C, [Save to disk]
    • View 1T8C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1T8C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T8C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t8c_A] [1t8c]
  • SWISS-PROT database: [P06734]
  • Domain organization of [FCER2_HUMAN] by SWISSPFAM
  • Domain found in 1T8C: [CLECT ] by SMART
    • Other resources with information on 1T8C
  • Community annotation for 1T8C at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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