1T9P Electron Transport date May 18, 2004
title Crystal Structure Of V44a, G45p Cp Rubredoxin
authors I.Y.Park, M.K.Eidsness, I.J.Lin, E.B.Gebel, B.Youn, J.L.Harley, T.E.Machonkin, R.O.Frederick, J.L.Markley, E.T.Smith, T.Ichiye,
compound source
Molecule: Rubredoxin
Chain: A, B, C
Synonym: Rd
Engineered: Yes
Mutation: Yes
Organism_scientific: Clostridium Pasteurianum
Organism_taxid: 1501
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.196 R_Free 0.215
length a length b length c angle alpha angle beta angle gamma
37.920 56.450 38.330 90.00 112.61 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand FE enzyme
related structures by homologous chain: 1FHH, 1IU5
A, C, B
  • electron transfer activity

  • Primary referenceCrystallographic studies of V44 mutants of Clostridium pasteurianum rubredoxin: Effects of side-chain size on reduction potential., Park IY, Eidsness MK, Lin IJ, Gebel EB, Youn B, Harley JL, Machonkin TE, Frederick RO, Markley JL, Smith ET, Ichiye T, Kang C, Proteins 2004 Sep 20;57(3):618. PMID:15382226
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1t9p.pdb1.gz) 10 Kb
  • Biological Unit Coordinates (1t9p.pdb2.gz) 10 Kb
  • Biological Unit Coordinates (1t9p.pdb3.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 1T9P
  • CSU: Contacts of Structural Units for 1T9P
  • Likely Quarternary Molecular Structure file(s) for 1T9P
  • Structure Factors (214 Kb)
  • Retrieve 1T9P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T9P from S2C, [Save to disk]
  • Re-refined 1t9p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1T9P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T9P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1T9P 1T9PA 1T9PB 1T9PC from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1T9P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t9pa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1t9pb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1t9pc_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1t9p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t9p_B] [1t9p_C] [1t9p_A] [1t9p]
  • SWISS-PROT database: [P00268]
  • Domain organization of [RUBR_CLOPA] by SWISSPFAM
  • Other resources with information on 1T9P
  • Community annotation for 1T9P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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