1TB7	Hydrolase	date	May 19, 2004
title	Catalytic Domain Of Human Phosphodiesterase 4d In Complex Wi
authors	K.Y.J.Zhang, G.L.Card, Y.Suzuki, D.R.Artis, D.Fong, S.Gillette, D. J.Neiman, B.L.West, C.Zhang, M.V.Milburn, S.H.Kim, J.Schlessing G.Bollag
compound		source
Molecule: Camp-Specific 3',5'-Cyclic Phosphodiesterase 4d Chain: A, B Fragment: Catalytic Domain Synonym: Dpde3, Pde43 Ec: 3.1.4.17 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Codon Plus(Ril) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.179 R_Free 0.192
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.316 78.958 164.740 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.63 Å
ligand	AMP, B3P, EDO, MG, ZN	enzyme	Hydrolase E.C.3.1.4.17 BRENDA
related structures	by homologous chain: 1TBB, 1Y2C
Gene Ontology	Chain Function Process Component A, B
Primary reference	cA Glutamine Switch Mechanism for Nucleotide Selectivity by Phosphodiesterases., Zhang KY, Card GL, Suzuki Y, Artis DR, Fong D, Gillette S, Hsieh D, Neiman J, West BL, Zhang C, Milburn MV, Kim SH, Schlessinger J, Bollag G, Mol Cell 2004 Jul 23;15(2):279-86. PMID:15260978

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk] Biological Unit Coordinates (1tb7.pdb1.gz) 59 Kb Biological Unit Coordinates (1tb7.pdb2.gz) 59 Kb LPC: Ligand-Protein Contacts for 1TB7 CSU: Contacts of Structural Units for 1TB7 Likely Quarternary Molecular Structure file(s) for 1TB7 Structure Factors (661 Kb) Retrieve 1TB7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1TB7 from S2C, [Save to disk] Re-refined 1tb7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1TB7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1TB7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1TB7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1tb7a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1tb7b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1tb7_B] [1tb7_A] [1tb7] SWISS-PROT database: [Q08499] Domain organization of [PDE4D_HUMAN] by SWISSPFAM Domain found in 1TB7: [HDc ] by SMART

Other resources with information on 1TB7

Community annotation for 1TB7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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