1TBI Signal Transduction Protein date Jul 20, 1995
title Tertiary Model Of Extracellular Domain Of Type I Receptor For Transforming Growth Factor-Beta, Theoretical Model
authors T.S.Jokiranta, J.Tissari, O.Teleman, S.Meri
compound source
Molecule: Type I Receptor For Transforming Growth Factor- Beta;
Chain: A
Fragment: Extracellular Domain
Synonym: Humalk-5, Alk-5
Ec: 2.7.1.37
 Organism_scientific: Homo Sapiens
Organism_common: Human
methodTheoretical Model
ligand
enzyme Transferase E.C.2.7.1.37 BRENDA
Primary referenceExtracellular domain of type I receptor for transforming growth factor-beta: molecular modelling using protectin (CD59) as a template., Jokiranta TS, Tissari J, Teleman O, Meri S, FEBS Lett 1995 Nov 27;376(1-2):31-6. PMID:8521960
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1TBI
  • SEQRES to COORDINATES correlation for 1TBI from S2C, [Save to disk]
    • View 1TBI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 1TBI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1tbi from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • SWISS-PROT database: [P36897]
  • Domain organization of [TGFR1_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1TBI with the sequences similar proteins can be viewed for 1TBI's classification [TGFR1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [TGFR1_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 1TBI
  • Community annotation for 1TBI at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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