1TF0 Protein Binding date May 26, 2004
title Crystal Structure Of The Ga Module Complexed With Human Seru
authors S.Lejon, S.Svensson, L.Bjorck, I.M.Frick, M.Wikstrom
compound source
Molecule: Serum Albumin
Chain: A
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Peptostreptococcal Albumin-Binding Protein
Chain: B
Engineered: Yes

Organism_scientific: Finegoldia Magna
Organism_taxid: 334413
Strain: Atcc 29328
Gene: Pab
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phd389
symmetry Space Group: C 2 2 21
R_factor 0.249 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.295 134.799 122.463 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand CIT, DKA enzyme
related structures by homologous chain: 1E7I, 1GAB, 1HK2
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure and biological implications of a bacterial albumin binding module in complex with human serum albumin., Lejon S, Frick IM, Bjorck L, Wikstrom M, Svensson S, J Biol Chem 2004 Oct 8;279(41):42924-8. Epub 2004 Jul 21. PMID:15269208
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (1tf0.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 1TF0
  • CSU: Contacts of Structural Units for 1TF0
  • Likely Quarternary Molecular Structure file(s) for 1TF0
  • Structure Factors (385 Kb)
  • Retrieve 1TF0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TF0 from S2C, [Save to disk]
  • Re-refined 1tf0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TF0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TF0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TF0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tf0a2, region A:197-388 [Jmol] [rasmolscript] [script source]
        - Domain d1tf0a3, region A:389-572 [Jmol] [rasmolscript] [script source]
        - Domain d1tf0a1, region A:5-196 [Jmol] [rasmolscript] [script source]
        - Domain d1tf0b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1tf0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tf0] [1tf0_A] [1tf0_B]
  • SWISS-PROT database: [P02768] [Q51911]
  • Domain organization of [ALBU_HUMAN] [PAB_PEPMA] by SWISSPFAM
  • Domain found in 1TF0: [ALBUMIN ] by SMART
  • Other resources with information on 1TF0
  • Community annotation for 1TF0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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