1TF9 Hydrolase date May 27, 2004
title Streptomyces Griseus Aminopeptidase Complexed With P-Iodo-L- Phenylalanine
authors V.Reiland, R.Gilboa, A.Spungin-Bialik, D.Schomburg, Y.Shoham, S.Blumberg, G.Shoham
compound source
Molecule: Aminopeptidase
Chain: A
Synonym: Sgap
Ec: 3.4.11.-
Organism_scientific: Streptomyces Griseus
Organism_taxid: 1911
Other_details: The Enzyme Is Isolated From The Commercially Available Enzyme Mixture "Pronase E"
symmetry Space Group: P 41 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.053 61.053 144.502 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand CA, PHI, ZN enzyme Hydrolase E.C.3.4.11 BRENDA
related structures by homologous chain: 1TF8, 1TKH
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBinding of inhibitory aromatic amino acids to Streptomyces griseus aminopeptidase., Reiland V, Gilboa R, Spungin-Bialik A, Schomburg D, Shoham Y, Blumberg S, Shoham G, Acta Crystallogr D Biol Crystallogr 2004 Oct;60(Pt 10):1738-46. Epub 2004, Sep 23. PMID:15388919
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (1tf9.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 1TF9
  • CSU: Contacts of Structural Units for 1TF9
  • Likely Quarternary Molecular Structure file(s) for 1TF9
  • Structure Factors (1073 Kb)
  • Retrieve 1TF9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TF9 from S2C, [Save to disk]
  • Re-refined 1tf9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TF9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TF9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TF9, from MSDmotif at EBI
  • Fold representative 1tf9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tf9_A] [1tf9]
  • SWISS-PROT database: [P80561]
  • Domain organization of [APX_STRGR] by SWISSPFAM
  • Other resources with information on 1TF9
  • Community annotation for 1TF9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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