1TFT Apoptosis date May 27, 2004
title Nmr Structure Of An Antagonists Of The Xiap-Caspase-9 Intera Complexed To The Bir3 Domain Of Xiap
authors T.K.Oost, C.Sun, R.C.Armstrong, A.S.Al-Assaad, S.F.Betz, T.L.Deck S.W.Elmore, R.P.Meadows, E.T.Olejniczak, A.K.Oleksijew, T.Olter S.H.Rosenberg, A.R.Shoemaker, H.Zou, S.W.Fesik
compound source
Molecule: Baculoviral Iap Repeat-Containing Protein 4
Chain: A
Fragment: Bir3 Of Xiap: Residues 241-356
Synonym: Inhibitor Of Apoptosis Protein 3, X-Linked Inhibit Apoptosis Protein, X-Linked Iap, Iap-Like Protein, Hilp;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Birc4, Api3, Iap3, Xiap
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
methodSolution NMR
ligand 997, ZN BindingDB enzyme
related structures by homologous chain: 1F9X, 1TFQ
Primary referenceDiscovery of potent antagonists of the antiapoptotic protein XIAP for the treatment of cancer., Oost TK, Sun C, Armstrong RC, Al-Assaad AS, Betz SF, Deckwerth TL, Ding H, Elmore SW, Meadows RP, Olejniczak ET, Oleksijew A, Oltersdorf T, Rosenberg SH, Shoemaker AR, Tomaselli KJ, Zou H, Fesik SW, J Med Chem 2004 Aug 26;47(18):4417-26. PMID:15317454
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1tft.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1TFT
  • CSU: Contacts of Structural Units for 1TFT
  • Retrieve 1TFT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TFT from S2C, [Save to disk]
    • View 1TFT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TFT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TFT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tft] [1tft_A]
  • SWISS-PROT database: [P98170]
  • Domain organization of [XIAP_HUMAN] by SWISSPFAM
  • Domain found in 1TFT: [BIR ] by SMART
    • Other resources with information on 1TFT
  • Community annotation for 1TFT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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