1TGH Transcription Dna date Feb 13, 1996
title Tata Binding Protein (Tbp)Dna Complex
authors Z.S.Juo, R.E.Dickerson
compound source
Molecule: Dna (5'-D(Cpgptpaptpaptpaptpapcpg)- 3');
Chain: B, C
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Tata Binding Protein (Tbp))
Chain: A
Synonym: Htbp
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbp
Expression_system: Escherichia Coli K12
Expression_system_taxid: 83333
Expression_system_strain: K12
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.294
length a length b length c angle alpha angle beta angle gamma
66.965 67.397 86.226 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
note 1TGH (Molecule of the Month:pdb67)
related structures by homologous chain: 1NGM, 1VOL

Primary referenceHow proteins recognize the TATA box., Juo ZS, Chiu TK, Leiberman PM, Baikalov I, Berk AJ, Dickerson RE, J Mol Biol 1996 Aug 16;261(2):239-54. PMID:8757291
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1tgh.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 1TGH
  • Likely Quarternary Molecular Structure file(s) for 1TGH
  • Structure Factors (67 Kb)
  • Retrieve 1TGH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TGH from S2C, [Save to disk]
  • Re-refined 1tgh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TGH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TGH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TGH, from MSDmotif at EBI
  • Genome occurence of 1TGH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tgha1, region A:155-252 [Jmol] [rasmolscript] [script source]
        - Domain d1tgha2, region A:253-334 [Jmol] [rasmolscript] [script source]
  • Fold representative 1tgh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tgh_C] [1tgh_B] [1tgh_A] [1tgh]
  • SWISS-PROT database: [P20226]
  • Domain organization of [TBP_HUMAN] by SWISSPFAM
  • Other resources with information on 1TGH
  • Community annotation for 1TGH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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