1TI5 Plant Protein date Jun 02, 2004
title Solution Structure Of Plant Defensin
authors Y.J.Liu, C.S.Cheng, Y.N.Liu, M.P.Hsu, C.S.Chen, P.C.Lyu
compound source
Molecule: Plant Defensin
Chain: A
Organism_scientific: Vigna Radiata
Organism_taxid: 157791
Other_details: Seed
methodSolution NMR
note 1TI5 is a representative structure
Primary referenceSolution structure of the plant defensin VrD1 from mung bean and its possible role in insecticidal activity against bruchids., Liu YJ, Cheng CS, Lai SM, Hsu MP, Chen CS, Lyu PC, Proteins. 2006 Jun 1;63(4):777-86. PMID:16544327
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (1ti5.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 1TI5
  • Retrieve 1TI5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TI5 from S2C, [Save to disk]
  • View 1TI5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TI5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TI5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ti5_A] [1ti5]
  • SWISS-PROT database: [Q6T418]
  • Domain organization of [Q6T418_9FABA] by SWISSPFAM
  • Domain found in 1TI5: [Knot1 ] by SMART
  • Other resources with information on 1TI5
  • Community annotation for 1TI5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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