1TIJ Hydrolase Inhibitor date Jun 02, 2004
title 3d Domain-Swapped Human Cystatin C With Amyloid-Like Intermolecular Beta-Sheets
authors R.Janowski, M.Kozak, M.Abrahamson, A.Grubb, M.Jaskolski
compound source
Molecule: Cystatin C
Chain: A, B
Synonym: Gamma-Trace, Post-Gamma-Globulin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cst3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Mc1061
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phd 313
symmetry Space Group: P 41 21 2
R_factor 0.217 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.490 91.490 144.450 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.03 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary reference3D domain-swapped human cystatin C with amyloidlike intermolecular beta-sheets., Janowski R, Kozak M, Abrahamson M, Grubb A, Jaskolski M, Proteins 2005 Sep 16;. PMID:16170782
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1tij.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 1TIJ
  • Likely Quarternary Molecular Structure file(s) for 1TIJ
  • Structure Factors (151 Kb)
  • Retrieve 1TIJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TIJ from S2C, [Save to disk]
  • Re-refined 1tij structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TIJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TIJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TIJ, from MSDmotif at EBI
  • Fold representative 1tij from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tij_B] [1tij] [1tij_A]
  • SWISS-PROT database: [P01034]
  • Domain organization of [CYTC_HUMAN] by SWISSPFAM
  • Domain found in 1TIJ: [CY ] by SMART
  • Alignments of the sequence of 1TIJ with the sequences similar proteins can be viewed for 1TIJ's classification [CYTC_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CYTC_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1TIJ
  • Community annotation for 1TIJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science