1TJJ Signaling Protein date Jun 04, 2004
title Human Gm2 Activator Protein Paf Complex
authors C.S.Wright, L.Z.Mi, F.Rastinejad
compound source
Molecule: Ganglioside Gm2 Activator
Chain: A, B, C
Synonym: Gm2-Ap, Cerebroside Sulfate Activator Protein, Shi Activator Protein 3, Sap-3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Liver,Placenta,Kidney,Brain
Gene: Gm2a
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b(Novagen)
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.470 86.510 120.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACT, CL, DAO, EPE, IPA, LPE, PFS enzyme
related structures by homologous chain: 1G13, 1PU5
subcellular loc. Membrane localization by OPM: Lysosome membrane
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceEvidence for lipid packaging in the crystal structure of the GM2-activator complex with platelet activating factor., Wright CS, Mi LZ, Rastinejad F, J Mol Biol 2004 Sep 10;342(2):585-92. PMID:15327957
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (1tjj.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (1tjj.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (1tjj.pdb3.gz) 33 Kb
  • Biological Unit Coordinates (1tjj.pdb4.gz) 94 Kb
  • Biological Unit Coordinates (1tjj.pdb5.gz) 65 Kb
  • Biological Unit Coordinates (1tjj.pdb6.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 1TJJ
  • CSU: Contacts of Structural Units for 1TJJ
  • Likely Quarternary Molecular Structure file(s) for 1TJJ
  • Structure Factors (328 Kb)
  • Retrieve 1TJJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TJJ from S2C, [Save to disk]
  • Re-refined 1tjj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TJJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TJJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TJJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tjja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1tjjb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1tjjc_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1tjj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tjj] [1tjj_B] [1tjj_A] [1tjj_C]
  • SWISS-PROT database: [P17900]
  • Domain organization of [SAP3_HUMAN] by SWISSPFAM
  • Domain found in 1TJJ: [ML ] by SMART
  • Other resources with information on 1TJJ
  • Community annotation for 1TJJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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