1TKW Photosynthesis date Jun 09, 2004
title The Transient Complex Of Poplar Plastocyanin With Turnip Cytochrome F Determined With Paramagnetic Nmr
authors C.Lange, T.Cornvik, I.Diaz-Moreno, M.Ubbink
compound source
Molecule: Plastocyanin A
Chain: A
Engineered: Yes
Organism_scientific: Populus Nigra
Organism_taxid: 3691
Gene: Pete
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petpc

Molecule: Cytochrome F
Chain: B
Engineered: Yes

Organism_scientific: Brassica Rapa Subsp. Rapa
Organism_common: Turnip
Organism_taxid: 51350
Strain: Subsp. Rapa
Gene: Peta
Expression_system: Escherichia Coli Str. K12 Substr. W3110
Expression_system_taxid: 316407
Expression_system_strain: W3110
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptc1
methodSolution NMR
ligand CU, HEC enzyme
related structures by homologous chain: 1PLB, 4PCY
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe transient complex of poplar plastocyanin with cytochrome f: effects of ionic strength and pH., Lange C, Cornvik T, Diaz-Moreno I, Ubbink M, Biochim Biophys Acta 2005 April - May;1707(2-3):179-88. Epub 2004 Dec 29. PMID:15863096
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (922 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1TKW
  • CSU: Contacts of Structural Units for 1TKW
  • Retrieve 1TKW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TKW from S2C, [Save to disk]
  • View 1TKW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TKW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TKW, from MSDmotif at EBI
  • Fold representative 1tkw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tkw] [1tkw_A] [1tkw_B]
  • SWISS-PROT database: [P36438] [P00299]
  • Domain organization of [CYF_BRARA] [PLAS1_POPNI] by SWISSPFAM
  • Other resources with information on 1TKW
  • Community annotation for 1TKW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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