1TM6 Protein Transport date Jun 10, 2004
title Nmr Structure Of The Free Zinc Binding C-Terminal Domain Of
authors W.M.Matousek, A.T.Alexandrescu
compound source
Molecule: Preprotein Translocase Seca Subunit
Chain: A
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
methodSolution NMR
ligand ZN enzyme
Primary referenceNMR structure of the C-terminal domain of SecA in the free state., Matousek WM, Alexandrescu AT, Biochim Biophys Acta 2004 Nov 1;1702(2):163-71. PMID:15488768
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (1tm6.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 1TM6
  • CSU: Contacts of Structural Units for 1TM6
  • Original NMR restraints for 1TM6 from PDB
  • Retrieve 1TM6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TM6 from S2C, [Save to disk]
    • View 1TM6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TM6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TM6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tm6a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tm6_A] [1tm6]
  • SWISS-PROT database: [P10408]
  • Belongs to the general secretory pathway (sec) family according to TCDB.
  • Domain organization of [SECA_ECOLI] by SWISSPFAM
    • Other resources with information on 1TM6
  • Community annotation for 1TM6 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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