1TNR Complex(Lymphokine Receptor) date May 09, 1994
title Crystal Structure Of The Soluble Human 55 Kd Tnf Receptor- Human Tnf-Beta Complex: Implications For Tnf Receptor Activation
authors D.W.Banner
compound source
Molecule: Tumor Necrosis Factor Beta
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tumor Necrosis Factor Receptor P55
Chain: R
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Sf9 Cells
symmetry Space Group: I 2 3
R_factor 0.160 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.640 145.640 145.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
related structures by homologous chain: 1FT4, 1NCF
Gene
Ontology
ChainFunctionProcessComponent
A


R


Primary referenceCrystal structure of the soluble human 55 kd TNF receptor-human TNF beta complex: implications for TNF receptor activation., Banner DW, D'Arcy A, Janes W, Gentz R, Schoenfeld HJ, Broger C, Loetscher H, Lesslauer W, Cell 1993 May 7;73(3):431-45. PMID:8387891
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1tnr.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 1TNR
  • Likely Quarternary Molecular Structure file(s) for 1TNR
  • Retrieve 1TNR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TNR from S2C, [Save to disk]
  • View 1TNR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TNR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TNR, from MSDmotif at EBI
  • Genome occurence of 1TNR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tnra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1tnrr3, region R:116-153 [Jmol] [rasmolscript] [script source]
        - Domain d1tnrr1, region R:15-71 [Jmol] [rasmolscript] [script source]
        - Domain d1tnrr2, region R:72-115 [Jmol] [rasmolscript] [script source]
  • Fold representative 1tnr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tnr_R] [1tnr] [1tnr_A]
  • SWISS-PROT database: [P01374] [P19438]
  • Domain organization of [TNFB_HUMAN] [TNR1A_HUMAN] by SWISSPFAM
  • Domains found in 1TNR: [TNF] [TNFR ] by SMART
  • Other resources with information on 1TNR
  • Community annotation for 1TNR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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