1TNZ	Transferase	date	Jun 11, 2004
title	Rat Protein Geranylgeranyltransferase Type-I Complexed With Analog And A Rrcvll Peptide Derived From Cdc42 Splice Isofo
authors	T.S.Reid, K.L.Terry, P.J.Casey, L.S.Beese
compound		source
Molecule: Geranylgeranyltransferase Type I Alpha Subunit Chain: A, C, E, G, I, K Synonym: Type I Protein Geranyl-Geranyltransferase Alpha Su Ggtase-I-Alpha; Ec: 2.5.1.59 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Fnta Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
Molecule: Geranylgeranyl Transferase Type I Beta Subunit Chain: B, D, F, H, J, L Synonym: Type I Protein Geranyl-Geranyltransferase Beta Sub Ggtase-I-Beta; Ec: 2.5.1.59 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Pggt1b Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
Molecule: Cell Division Control Protein 42 Homolog (Cdc42) Chain: M, N, O, P, Q, R Fragment: C-Terminal Residues 186-191 Engineered: Yes		Synthetic: Yes Other_details: The Substrate Peptide Was Chemically Synthes Sequence Of This Peptide Naturally Exists In Homo Sapiens (
symmetry	Space Group: C 1 2 1	R_factor 0.199 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 271.262 266.922 185.750 90.00 131.91 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	CL, MES, MGM, ZN	enzyme	Transferase E.C.2.5.1.59 BRENDA
related structures	by homologous chain: 1D8E, 1TNB
Gene Ontology	Chain Function Process Component A, K, E, C, I, G acetylcholine receptor regul... F, J, B, H, D, L
Primary reference	Crystallographic analysis of CaaX prenyltransferases complexed with substrates defines rules of protein substrate selectivity., Reid TS, Terry KL, Casey PJ, Beese LS, J Mol Biol 2004 Oct 15;343(2):417-33. PMID:15451670

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (655 Kb) [Save to disk] Biological Unit Coordinates (1tnz.pdb1.gz) 113 Kb Biological Unit Coordinates (1tnz.pdb2.gz) 113 Kb Biological Unit Coordinates (1tnz.pdb3.gz) 114 Kb Biological Unit Coordinates (1tnz.pdb4.gz) 113 Kb Biological Unit Coordinates (1tnz.pdb5.gz) 113 Kb Biological Unit Coordinates (1tnz.pdb6.gz) 115 Kb LPC: Ligand-Protein Contacts for 1TNZ CSU: Contacts of Structural Units for 1TNZ Likely Quarternary Molecular Structure file(s) for 1TNZ Structure Factors (2185 Kb) Retrieve 1TNZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1TNZ from S2C, [Save to disk] Re-refined 1tnz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1TNZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1TNZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1TNZ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1tnza_, region A [Jmol] [rasmolscript] [script source]     - Domain d1tnzb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1tnzc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1tnzd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1tnze_, region E [Jmol] [rasmolscript] [script source]     - Domain d1tnzf_, region F [Jmol] [rasmolscript] [script source]     - Domain d1tnzg_, region G [Jmol] [rasmolscript] [script source]     - Domain d1tnzh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1tnzi_, region I [Jmol] [rasmolscript] [script source]     - Domain d1tnzj_, region J [Jmol] [rasmolscript] [script source]     - Domain d1tnzk_, region K [Jmol] [rasmolscript] [script source]     - Domain d1tnzl_, region L [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1tnz_B] [1tnz_O] [1tnz_E] [1tnz_C] [1tnz_P] [1tnz_K] [1tnz_A] [1tnz_N] [1tnz_M] [1tnz_L] [1tnz_F] [1tnz] [1tnz_R] [1tnz_I] [1tnz_H] [1tnz_D] [1tnz_J] [1tnz_Q] [1tnz_G] SWISS-PROT database: [Q04631] [P53610] Domain organization of [FNTA_RAT] [PGTB1_RAT] by SWISSPFAM

Other resources with information on 1TNZ

Community annotation for 1TNZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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