1TOT Transferase date Jun 15, 2004
title Zz Domain Of Cbp- A Novel Fold For A Protein Interaction Mod
authors G.B.Legge, M.A.Martinez-Yamout, D.M.Hambly, T.Trinh, H.J.Dyson, P
compound source
Molecule: Creb-Binding Protein
Chain: A
Fragment: Zz Domain Of Murine Cbp (Residues 1700-1751)
Ec: 2.3.1.48
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Crebbp, Cbp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) [Dnay]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
methodSolution NMR
ligand ZN enzyme Transferase E.C.2.3.1.48 BRENDA
note 1TOT is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceZZ domain of CBP: an unusual zinc finger fold in a protein interaction module., Legge GB, Martinez-Yamout MA, Hambly DM, Trinh T, Lee BM, Dyson HJ, Wright PE, J Mol Biol 2004 Oct 29;343(4):1081-93. PMID:15476823
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (282 Kb) [Save to disk]
  • Biological Unit Coordinates (1tot.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1TOT
  • CSU: Contacts of Structural Units for 1TOT
  • Original NMR restraints for 1TOT from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1TOT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TOT from S2C, [Save to disk]
    • View 1TOT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TOT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TOT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tot] [1tot_A]
  • SWISS-PROT database: [P45481]
  • Domain organization of [CBP_MOUSE] by SWISSPFAM
  • Domain found in 1TOT: [ZnF_ZZ ] by SMART
    • Other resources with information on 1TOT
  • Community annotation for 1TOT at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science