1TPL Lyase(Carbon-Carbon) date Nov 25, 1992
title The Three-Dimensional Structure Of Tyrosine Phenol-Lyase
authors A.Antson, T.Demidkina, Z.Dauter, E.Harutyunyan, K.Wilson
compound source
Molecule: Tyrosine Phenol-Lyase
Chain: A, B
Engineered: Yes
Organism_scientific: Citrobacter Intermedius
Organism_taxid: 66695
symmetry Space Group: P 21 21 2
length a length b length c angle alpha angle beta angle gamma
76.020 138.270 93.540 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand SO4 enzyme Lyase E.C. BRENDA
related structures by homologous chain: 1C7G, 2TPL
A, B

Primary referenceThree-dimensional structure of tyrosine phenol-lyase., Antson AA, Demidkina TV, Gollnick P, Dauter Z, von Tersch RL, Long J, Berezhnoy SN, Phillips RS, Harutyunyan EH, Wilson KS, Biochemistry 1993 Apr 27;32(16):4195-206. PMID:7916622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (1tpl.pdb1.gz) 289 Kb
  • LPC: Ligand-Protein Contacts for 1TPL
  • CSU: Contacts of Structural Units for 1TPL
  • Likely Quarternary Molecular Structure file(s) for 1TPL
  • Retrieve 1TPL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TPL from S2C, [Save to disk]
  • View 1TPL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TPL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TPL, from MSDmotif at EBI
  • Genome occurence of 1TPL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tpla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1tplb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1tpl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tpl_A] [1tpl_B] [1tpl]
  • SWISS-PROT database: [P31013]
  • Domain organization of [TPL_CITFR] by SWISSPFAM
  • Other resources with information on 1TPL
  • Community annotation for 1TPL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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