1TR2 Cell Adhesion date Jun 19, 2004
title Crystal Structure Of Human Full-Length Vinculin (Residues 1- 1066)
authors R.A.Borgon, C.Vonrhein, G.Bricogne, P.R.Bois, T.Izard
compound source
Molecule: Vinculin Isoform 1
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vcl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3) And Bl21(De3)
Expression_system_plasmid: Pet3
symmetry Space Group: P 1 21 1
R_factor 0.232 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.740 154.080 108.950 90.00 90.44 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of human vinculin., Borgon RA, Vonrhein C, Bricogne G, Bois PR, Izard T, Structure (Camb) 2004 Jul;12(7):1189-97. Epub 2004 Jun 3. PMID:15242595
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (340 Kb) [Save to disk]
  • Biological Unit Coordinates (1tr2.pdb1.gz) 167 Kb
  • Biological Unit Coordinates (1tr2.pdb2.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 1TR2
  • CSU: Contacts of Structural Units for 1TR2
  • Likely Quarternary Molecular Structure file(s) for 1TR2
  • Retrieve 1TR2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TR2 from S2C, [Save to disk]
  • View 1TR2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TR2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TR2, from MSDmotif at EBI
  • Fold representative 1tr2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tr2_A] [1tr2] [1tr2_B]
  • SWISS-PROT database: [P18206]
  • Domain organization of [VINC_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1TR2 with the sequences similar proteins can be viewed for 1TR2's classification [VINC_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [VINC_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1TR2
  • Community annotation for 1TR2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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