OCA Atlas for 1TR4

1TR4

Unknown Function

date

Jun 19, 2004

title

Solution Structure Of Human Oncogenic Protein Gankyrin

authors

C.Yuan, J.Li, A.Mahajan, M.J.Poi, I.J.Byeon, M.D.Tsai

compound

source

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 10
Chain: A
Synonym: 26s Proteasome Regulatory Subunit P28, Gankyrin
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psmd10
Expression_system: Escherichia Coli
Expression_system_taxid: 562

method

Solution NMR

related structures

by homologous chain: 1QYM

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Solution structure of the human oncogenic protein gankyrin containing seven ankyrin repeats and analysis of its structure--function relationship., Yuan C, Li J, Mahajan A, Poi MJ, Byeon IJ, Tsai MD, Biochemistry 2004 Sep 28;43(38):12152-61. PMID:15379554

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1150 Kb) [Save to disk]

Biological Unit Coordinates (1tr4.pdb1.gz) 57 Kb

CSU: Contacts of Structural Units for 1TR4

Original NMR restraints for 1TR4 from PDB

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1TR4 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1TR4 from S2C, [Save to disk]

View 1TR4 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1TR4

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1TR4, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1tr4a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1tr4_A] [1tr4]

SWISS-PROT database: [O75832]

Domain organization of [PSD10_HUMAN] by SWISSPFAM

Domain found in 1TR4: [ANK ] by SMART

Other resources with information on 1TR4

Community annotation for 1TR4 at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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