1TTN Signaling Protein date Jun 23, 2004
title Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells
authors H.Y.Hu
compound source
Molecule: Dendritic Cell-Derived Ubiquitin-Like Protein
Chain: A
Fragment: Ubiquitin-Like Domain
Synonym: Dc-Ubp
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-22b(+)
methodSolution NMR
Primary referenceSolution structure of the ubiquitin-like domain of human DC-UbP from dendritic cells., Gao YG, Song AX, Shi YH, Chang YG, Liu SX, Yu YZ, Cao XT, Lin DH, Hu HY, Protein Sci 2005 Aug;14(8):2044-50. Epub 2005 Jun 29. PMID:15987890
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (335 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1TTN
  • Original NMR restraints for 1TTN from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1TTN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TTN from S2C, [Save to disk]
  • View 1TTN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TTN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TTN, from MSDmotif at EBI
  • Fold representative 1ttn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ttn] [1ttn_A]
  • SWISS-PROT database: [Q8WUN7]
  • Domain organization of [UBTD2_HUMAN] by SWISSPFAM
  • Domain found in 1TTN: [UBQ ] by SMART
  • Other resources with information on 1TTN
  • Community annotation for 1TTN at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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