1TTV Ligase date Jun 23, 2004
title Nmr Structure Of A Complex Between Mdm2 And A Small Molecule
authors D.C.Fry, S.D.Emerson, S.Palme, B.T.Vu, C.M.Liu, F.Podlaski
compound source
Molecule: Ubiquitin-Protein Ligase E3 Mdm2
Chain: A
Fragment: Resiudes 13-119
Synonym: P53-Binding Protein Mdm2, Double Minute 2 Protein,
Ec: 6.3.2.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Mdm2
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pubs 520
methodSolution NMR
ligand IMY enzyme Ligase E.C.6.3.2 BRENDA
related structures by homologous chain: 1T4E
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure of a complex between MDM2 and a small molecule inhibitor., Fry DC, Emerson SD, Palme S, Vu BT, Liu CM, Podlaski F, J Biomol NMR 2004 Oct;30(2):163-73. PMID:15557803
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (537 Kb) [Save to disk]
  • Biological Unit Coordinates (1ttv.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1TTV
  • CSU: Contacts of Structural Units for 1TTV
  • Original NMR restraints for 1TTV from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1TTV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TTV from S2C, [Save to disk]
  • View 1TTV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TTV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TTV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ttva_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ttv] [1ttv_A]
  • SWISS-PROT database: [P56273]
  • Domain organization of [MDM2_XENLA] by SWISSPFAM
  • Other resources with information on 1TTV
  • Community annotation for 1TTV at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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