1TU8 Transferase date Jun 24, 2004
title Structure Of Onchoverca Volvulus Pi-Class Glutathione S-Tran With Its Kompetitive Inhibitor S-Hexyl-Gsh
authors M.Perbandt
compound source
Molecule: Glutathione S-Transferase 2
Chain: A, B, C, D
Synonym: Glutathione S-Transferase, Gst Class-Pi
Ec: 2.5.1.18
Engineered: Yes
Organism_scientific: Onchocerca Volvulus
Organism_taxid: 6282
Gene: Gst2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plyss
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.968 81.999 107.110 90.00 91.23 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GTX enzyme Transferase E.C.2.5.1.18 BRENDA
related structures by homologous chain: 1TU7
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the major cytosolic glutathione S-transferase from the parasitic nematode Onchocerca volvulus., Perbandt M, Hoppner J, Betzel C, Walter RD, Liebau E, J Biol Chem 2005 Apr 1;280(13):12630-6. Epub 2005 Jan 7. PMID:15640152
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (1tu8.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (1tu8.pdb2.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 1TU8
  • CSU: Contacts of Structural Units for 1TU8
  • Likely Quarternary Molecular Structure file(s) for 1TU8
  • Structure Factors (610 Kb)
  • Retrieve 1TU8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TU8 from S2C, [Save to disk]
  • Re-refined 1tu8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TU8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TU8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TU8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tu8a2, region A:1-77 [Jmol] [rasmolscript] [script source]
        - Domain d1tu8a1, region A:78-208 [Jmol] [rasmolscript] [script source]
        - Domain d1tu8b2, region B:1-77 [Jmol] [rasmolscript] [script source]
        - Domain d1tu8b1, region B:78-208 [Jmol] [rasmolscript] [script source]
        - Domain d1tu8c2, region C:1-77 [Jmol] [rasmolscript] [script source]
        - Domain d1tu8c1, region C:78-208 [Jmol] [rasmolscript] [script source]
        - Domain d1tu8d2, region D:1-77 [Jmol] [rasmolscript] [script source]
        - Domain d1tu8d1, region D:78-208 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tu8_C] [1tu8_B] [1tu8_D] [1tu8] [1tu8_A]
  • SWISS-PROT database: [P46427]
  • Domain organization of [GSTP_ONCVO] by SWISSPFAM
  • Other resources with information on 1TU8
  • Community annotation for 1TU8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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