1TUA Structural Genomics, Unknown Function date Jun 24, 2004
title 1.5 A Crystal Structure Of A Protein Of Unknown Function Ape Aeropyrum Pernix
authors R.Zhang, T.Skarina, A.Savchenko, A.Edwards, A.Joachimiak, Midwest For Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein Ape0754
Chain: A
Engineered: Yes
 Organism_scientific: Aeropyrum Pernix
Organism_taxid: 56636
Gene: Gi:14600942
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.710 28.987 69.924 90.00 95.85 90.00
method X-Ray Diffractionresolution 1.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1tua.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 1TUA
  • Likely Quarternary Molecular Structure file(s) for 1TUA
  • Structure Factors (473 Kb)
  • Retrieve 1TUA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TUA from S2C, [Save to disk]
  • Re-refined 1tua structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1TUA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TUA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1TUA from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TUA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tuaa1, region A:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d1tuaa2, region A:85-188 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tua_A] [1tua]
  • SWISS-PROT database: [Q9YE16]
  • Domain organization of [Q9YE16_AERPE] by SWISSPFAM
  • Domain found in 1TUA: [KH ] by SMART
    • Other resources with information on 1TUA
  • Community annotation for 1TUA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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