1TXQ Structural Protein Protein Binding date Jul 06, 2004
title Crystal Structure Of The Eb1 C-Terminal Domain Complexed With The Cap-Gly Domain Of P150glued
authors I.Hayashi, M.Ikura
compound source
Molecule: Dynactin 1
Chain: A
Fragment: P150glued Cap-Gly Domain
Synonym: 150 Kda Dynein-Associated Polypeptide, Dp-150, Dap-150, P150-Glued, P135;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: P150glued
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Microtubule-Associated Protein Rpeb Family Member 1;
Chain: B
Fragment: Eb1 C-Terminal Domain
Synonym: Apc-Binding Protein Eb1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eb1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-1
symmetry Space Group: C 1 2 1
R_factor 0.203 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.085 80.210 39.239 90.00 108.52 90.00
method X-Ray Diffractionresolution 1.80 Å
Primary referenceStructural basis for the activation of microtubule assembly by the EB1 and p150Glued complex., Hayashi I, Wilde A, Mal TK, Ikura M, Mol Cell 2005 Aug 19;19(4):449-60. PMID:16109370
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1txq.pdb1.gz) 48 Kb
  • CSU: Contacts of Structural Units for 1TXQ
  • Likely Quarternary Molecular Structure file(s) for 1TXQ
  • Structure Factors (177 Kb)
  • Retrieve 1TXQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TXQ from S2C, [Save to disk]
  • Re-refined 1txq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TXQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TXQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TXQ, from MSDmotif at EBI
  • Fold representative 1txq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1txq_A] [1txq] [1txq_B]
  • SWISS-PROT database: [Q14203] [Q15691]
  • Domain organization of [DCTN1_HUMAN] [MARE1_HUMAN] by SWISSPFAM
  • Domain found in 1TXQ: [CAP_GLY ] by SMART
  • Alignments of the sequence of 1TXQ with the sequences similar proteins can be viewed for 1TXQ's classification [DCTN1_HUMAN] [MARE1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [DCTN1_HUMAN] [MARE1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1TXQ
  • Community annotation for 1TXQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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