1TYN Hydrolase(Serine Protease) date Sep 19, 1994
title Atomic Structure Of The Trypsin-Cyclotheonamide A Complex: Lessons For The Design Of Serine Protease Inhibitors
authors A.Y.Lee, M.Hagihara, R.Karmacharya, M.W.Albers, S.L.Schreiber, J.Clardy
compound source
Molecule: Beta-Trypsin
Chain: A
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 43 21 2
R_factor 0.169 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.730 71.730 88.820 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CTA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1tyn.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1TYN
  • CSU: Contacts of Structural Units for 1TYN
  • Likely Quarternary Molecular Structure file(s) for 1TYN
  • Retrieve 1TYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TYN from S2C, [Save to disk]
  • View 1TYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TYN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TYN, from MSDmotif at EBI
  • Genome occurence of 1TYN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tyn__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1tyn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tyn_A] [1tyn]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1TYN: [Tryp_SPc ] by SMART
  • Other resources with information on 1TYN
  • Community annotation for 1TYN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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