1TYR Retinol-Binding date May 12, 1995
title Transthyretin Complex With Retinoic Acid
authors G.Zanotti, M.R.D'Acunto, G.Malpeli, C.Folli, R.Berni
compound source
Molecule: Transthyretin
Chain: A, B
Synonym: Prealbumin
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.800 86.220 65.780 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 9CR enzyme
related structures by homologous chain: 1BZE, 1E4H
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • hormone activity


    • Primary referenceCrystal structure of the transthyretin--retinoic-acid complex., Zanotti G, D'Acunto MR, Malpeli G, Folli C, Berni R, Eur J Biochem 1995 Dec 1;234(2):563-9. PMID:8536704
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1tyr.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (1tyr.pdb2.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 1TYR
  • CSU: Contacts of Structural Units for 1TYR
  • Likely Quarternary Molecular Structure file(s) for 1TYR
  • Retrieve 1TYR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TYR from S2C, [Save to disk]
    • View 1TYR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TYR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TYR, from MSDmotif at EBI
  • Genome occurence of 1TYR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tyra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1tyrb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tyr] [1tyr_B] [1tyr_A]
  • SWISS-PROT database: [P02766]
  • Domain organization of [TTHY_HUMAN] by SWISSPFAM
  • Domain found in 1TYR: [TR_THY ] by SMART
    • Other resources with information on 1TYR
  • Community annotation for 1TYR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1TYR from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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