1TZS Hydrolase date Jul 12, 2004
title Crystal Structure Of An Activation Intermediate Of Cathepsin E
authors N.Ostermann, B.Gerhartz, S.Worpenberg, J.Trappe, J.Eder
compound source
Molecule: Cathepsin E
Chain: A
Ec: 3.4.23.34
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b

Molecule: Activation Peptide From Cathepsin E
Chain: P
Ec: 3.4.23.34
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b

Molecule: 23-Mer Peptide From Pelb-Igg Kappa Light Chain Fusion Protein;
Chain: X
Engineered: Yes

Synthetic: Yes
Other_details: The Sequence Occurs Peptide Synthesis
symmetry Space Group: P 41 21 2
R_factor 0.198 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.321 61.321 207.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand
enzyme Hydrolase E.C.3.4.23.34 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


P


Primary referenceCrystal structure of an activation intermediate of cathepsin E., Ostermann N, Gerhartz B, Worpenberg S, Trappe J, Eder J, J Mol Biol 2004 Sep 17;342(3):889-99. PMID:15342244
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1tzs.pdb1.gz) 111 Kb
  • CSU: Contacts of Structural Units for 1TZS
  • Likely Quarternary Molecular Structure file(s) for 1TZS
  • Structure Factors (144 Kb)
  • Retrieve 1TZS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TZS from S2C, [Save to disk]
  • Re-refined 1tzs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TZS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TZS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TZS, from MSDmotif at EBI
  • Fold representative 1tzs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tzs_X] [1tzs] [1tzs_P] [1tzs_A]
  • SWISS-PROT database: [P14091]
  • Domain organization of [CATE_HUMAN] by SWISSPFAM
  • Other resources with information on 1TZS
  • Community annotation for 1TZS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science