1U2D	Oxidoreductase	date	Jul 19, 2004
title	Structre Of Transhydrogenaes (Di.Nadh)2(Diii.Nadph)1 Asymmet Complex
authors	O.C.Mather, A.Singh, G.I.Van Boxel, S.A.White, J.B.Jackson
compound		source
Molecule: Nad(P) Transhydrogenase Subunit Alpha Part 1 Chain: A, B Synonym: Pyridine Nucleotide Transhydrogenase Subunit Alpha Nicotinamide Nucleotide Transhydrogenase Subunit Alpha 1, P Translocating Transhydrogenase Component 1, Di; Ec: 1.6.1.2 Engineered: Yes		Organism_scientific: Rhodospirillum Rubrum Organism_taxid: 1085 Gene: Pntaa, Nnta1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Nad(P) Transhydrogenase Subunit Beta Chain: C Fragment: Residues 262-464 Synonym: Pyridine Nucleotide Transhydrogenase Subunit Beta, Nicotinamide Nucleotide Transhydrogenase Subunit Beta, Prot Translocating Transhydrogenase Nadph, -Binding Component, D Ec: 1.6.1.2 Engineered: Yes		Organism_scientific: Rhodospirillum Rubrum Organism_taxid: 1085 Gene: Pntb, Nntb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.206 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.249 74.546 204.163 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	GOL, NAD, NDP	enzyme	Oxidoreductase E.C.1.6.1.2 BRENDA
related structures	by homologous chain: 1E3T, 1PTJ
Gene Ontology	Chain Function Process Component A, B NAD(P)+ transhydrogenase (B-...
Primary reference	Active-site conformational changes associated with hydride transfer in proton-translocating transhydrogenase., Mather OC, Singh A, van Boxel GI, White SA, Jackson JB, Biochemistry 2004 Aug 31;43(34):10952-64. PMID:15323555

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk] Biological Unit Coordinates (1u2d.pdb1.gz) 141 Kb LPC: Ligand-Protein Contacts for 1U2D CSU: Contacts of Structural Units for 1U2D Likely Quarternary Molecular Structure file(s) for 1U2D Retrieve 1U2D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1U2D from S2C, [Save to disk]

View 1U2D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1U2D

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1U2D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1u2d] [1u2d_C] [1u2d_B] [1u2d_A] SWISS-PROT database: [Q2RSB2] [Q2RSB4] Domain organization of [PNTAA_RHORT] [PNTB_RHORT] by SWISSPFAM Domains found in 1U2D: [AlaDh_PNT_C] [AlaDh_PNT_N ] by SMART

Other resources with information on 1U2D

Community annotation for 1U2D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---