1U35 Structural Protein Dna date Jul 20, 2004
title Crystal Structure Of The Nucleosome Core Particle Containing The Histone Domain Of Macroh2a
authors S.Chakravarthy, S.K.Gundimella, C.Caron, P.Y.Perche, J.R.Pehrson, S.Khochbin, K.Luger
compound source
Molecule: Alpha-Satellite Dna
Chain: I, J
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5-Alpha
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc19

Molecule: Histone H3.1
Chain: A, E
Synonym: H3a, H3c, H3d, H3f, H3h, H3i, H3j, H3k, H3l;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: H3fa, H3fc, H3fd, H3ff, H3fh, H3fi, H3fj, H3fk, H3fl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-De3-Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a

Molecule: Hist1h4i Protein
Chain: B, F
Synonym: Member Y Isoform 1, Histone Macroh2a1.2, Histone Macroh2a1.1;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-De3-Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a

Molecule: H2a Histone Family
Chain: C, G
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-De3-Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a

Molecule: Histone 3, H2ba
Chain: D, H
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-De3-Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.505 109.598 175.989 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Primary referenceStructural characterization of the histone variant macroH2A., Chakravarthy S, Gundimella SK, Caron C, Perche PY, Pehrson JR, Khochbin S, Luger K, Mol Cell Biol 2005 Sep;25(17):7616-24. PMID:16107708
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (1u35.pdb1.gz) 241 Kb
  • CSU: Contacts of Structural Units for 1U35
  • Likely Quarternary Molecular Structure file(s) for 1U35
  • Structure Factors (550 Kb)
  • Retrieve 1U35 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U35 from S2C, [Save to disk]
  • Re-refined 1u35 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1U35 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U35
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1U35, from MSDmotif at EBI
  • Fold representative 1u35 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u35_D] [1u35_G] [1u35] [1u35_J] [1u35_F] [1u35_C] [1u35_I] [1u35_E] [1u35_A] [1u35_B] [1u35_H]
  • SWISS-PROT database: [O75367] [Q9D2U9] [P68433] [P62806]
  • Domain organization of [H2AY_HUMAN] [H2B3A_MOUSE] [H31_MOUSE] [H4_MOUSE] by SWISSPFAM
  • Domains found in 1U35: [H2A] [H2B] [H3] [H4 ] by SMART
  • Other resources with information on 1U35
  • Community annotation for 1U35 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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