1U38 Protein Transport date Jul 21, 2004
title Auto-Inhibition Mechanism Of X11smints Family Scaffold Prot Revealed By The Closed Conformation Of The Tandem Pdz Domai
authors W.Feng, J.F.Long, L.N.Chan, C.He, A.Fu, J.Xia, N.Y.Ip, M.Zhang
compound source
Molecule: Amyloid Beta A4 Precursor Protein-Binding, Family 1;
Chain: A
Fragment: Pdz1 Domain
Synonym: X11alphamint1, Phosphotyrosine-Binding-Interacti (Ptb)-Bearing Protein, Neuronal Munc18-1-Interacting Protei Neuron-Specific X11 Protein, Adaptor Protein X11alpha;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a

Molecule: Pvyi
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Peptide
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAutoinhibition of X11/Mint scaffold proteins revealed by the closed conformation of the PDZ tandem., Long JF, Feng W, Wang R, Chan LN, Ip FC, Xia J, Ip NY, Zhang M, Nat Struct Mol Biol 2005 Jul 10;. PMID:16007100
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (486 Kb) [Save to disk]
  • Biological Unit Coordinates (1u38.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 1U38
  • Original NMR restraints for 1U38 from PDB
  • Retrieve 1U38 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U38 from S2C, [Save to disk]
  • View 1U38 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U38
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U38, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u38_B] [1u38_A] [1u38]
  • SWISS-PROT database: [Q02410]
  • Domain organization of [APBA1_HUMAN] by SWISSPFAM
  • Domain found in 1U38: [PDZ ] by SMART
  • Other resources with information on 1U38
  • Community annotation for 1U38 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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