1U4L Attractant date Jul 26, 2004
title Human Rantes Complexed To Heparin-Derived Disaccharide I-S
authors J.P.Shaw, Z.Johnson, F.Borlat, C.Zwahlen, A.Kungl, K.Roulin, A.Har T.N.C.Wells, A.E.I.Proudfoot
compound source
Molecule: Small Inducible Cytokine A5
Chain: A, B
Synonym: Ccl5, T-Cell Specific Rantes Protein, Sis-Delta, T Specific Protein P228, Tcp228;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccl5, Scya5
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.255
length a length b length c angle alpha angle beta angle gamma
24.017 56.350 94.412 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACY, H1S enzyme
related structures by homologous chain: 1U4M, 1U4P
A, B
  • receptor signaling protein t...
  • CCR1 chemokine receptor bind...
  • chemoattractant activity
  • chemokine receptor antagonis...

  • Primary referenceThe X-ray structure of RANTES: heparin-derived disaccharides allows the rational design of chemokine inhibitors., Shaw JP, Johnson Z, Borlat F, Zwahlen C, Kungl A, Roulin K, Harrenga A, Wells TN, Proudfoot AE, Structure. 2004 Nov;12(11):2081-93. PMID:15530372
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1u4l.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 1U4L
  • CSU: Contacts of Structural Units for 1U4L
  • Likely Quarternary Molecular Structure file(s) for 1U4L
  • Retrieve 1U4L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U4L from S2C, [Save to disk]
  • View 1U4L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U4L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1U4L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u4la_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1u4lb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1u4l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u4l_B] [1u4l_A] [1u4l]
  • SWISS-PROT database: [P13501]
  • Domain organization of [CCL5_HUMAN] by SWISSPFAM
  • Domain found in 1U4L: [SCY ] by SMART
  • Other resources with information on 1U4L
  • Community annotation for 1U4L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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