1U4R Attractant date Jul 26, 2004
title Crystal Structure Of Human Rantes Mutant 44-Aana-47
authors J.P.Shaw, Z.Johnson, F.Borlat, C.Zwahlen, A.Kungl, K.Roulin, A.Harrenga, T.N.C.Wells, A.E.I.Proudfoot
compound source
Molecule: Small Inducible Cytokine A5
Chain: A, B, C, D
Synonym: Ccl5, T-Cell Specific Rantes Protein, Sis-Delta, T Cell-Specific Protein P228, Tcp228;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccl5, Scya5
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23d
symmetry Space Group: P 1 21 1
R_factor 0.222 R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
22.818 80.475 65.442 90.00 94.52 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand SO4 enzyme
related structures by homologous chain: 1RTO, 1U4M
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • receptor signaling protein t...
  • CCR1 chemokine receptor bind...
  • chemoattractant activity
  • chemokine receptor antagonis...


  • Primary referenceThe X-ray structure of RANTES: heparin-derived disaccharides allows the rational design of chemokine inhibitors., Shaw JP, Johnson Z, Borlat F, Zwahlen C, Kungl A, Roulin K, Harrenga A, Wells TN, Proudfoot AE, Structure. 2004 Nov;12(11):2081-93. PMID:15530372
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1u4r.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (1u4r.pdb2.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 1U4R
  • CSU: Contacts of Structural Units for 1U4R
  • Likely Quarternary Molecular Structure file(s) for 1U4R
  • Retrieve 1U4R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U4R from S2C, [Save to disk]
  • View 1U4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U4R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1U4R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u4ra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1u4rb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1u4rc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1u4rd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1u4r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u4r_A] [1u4r_C] [1u4r_B] [1u4r] [1u4r_D]
  • SWISS-PROT database: [P13501]
  • Domain organization of [CCL5_HUMAN] by SWISSPFAM
  • Domain found in 1U4R: [SCY ] by SMART
  • Other resources with information on 1U4R
  • Community annotation for 1U4R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science