1U5S Metal Binding Protein date Jul 28, 2004
title Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And Pinch-1 Lim4 Domain
authors J.Vaynberg, T.Fukuda, O.Vinogradova, A.Velyvis, L.Ng, C.Wu, J.Qin
compound source
Molecule: Cytoplasmic Protein Nck2
Chain: A
Fragment: Third Sh3 Domain (Residues 192-262)
Synonym: Nck Adaptor Protein 2, Sh2sh3 Adaptor Protein Nck-Beta, Nck-2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nck2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb11

Molecule: Pinch Protein
Chain: B
Fragment: Fourth Lim Domain (Residues 188-251)
Synonym: Particularly Interesting New Cys-His Protein, Lim And Senescent Cell Antigen-Like Domains 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lims1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1
methodSolution NMR
ligand ZN enzyme
Primary referenceStructure of an ultraweak protein-protein complex and its crucial role in regulation of cell morphology and motility., Vaynberg J, Fukuda T, Chen K, Vinogradova O, Velyvis A, Tu Y, Ng L, Wu C, Qin J, Mol Cell 2005 Feb 18;17(4):513-23. PMID:15721255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (664 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1U5S
  • CSU: Contacts of Structural Units for 1U5S
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1U5S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U5S from S2C, [Save to disk]
  • View 1U5S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U5S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1U5S, from MSDmotif at EBI
  • Fold representative 1u5s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u5s_B] [1u5s] [1u5s_A]
  • SWISS-PROT database: [P48059] [O43639]
  • Domain organization of [LIMS1_HUMAN] [NCK2_HUMAN] by SWISSPFAM
  • Domains found in 1U5S: [LIM] [SH3 ] by SMART
  • Other resources with information on 1U5S
  • Community annotation for 1U5S at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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