1U84 Structural Genomics, Unknown Function date Aug 04, 2004
title Crystal Structure Of Apc36109 From Bacillus Stearothermophil
authors Y.Kim, M.Zhou, F.Collart, A.Joachimiak, Midwest Center For Struc Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein
Chain: A
Engineered: Yes
 Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 21 21 2
R_factor 0.205 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.781 64.540 29.092 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand EDO, GOL enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (1u84.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 1U84
  • CSU: Contacts of Structural Units for 1U84
  • Likely Quarternary Molecular Structure file(s) for 1U84
  • Structure Factors (122 Kb)
  • Retrieve 1U84 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U84 from S2C, [Save to disk]
  • Re-refined 1u84 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1U84 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1U84
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U84, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u84a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u84_A] [1u84]
  • SWISS-PROT database: [Q5KVS1]
  • Domain organization of [Q5KVS1_GEOKA] by SWISSPFAM
    • Other resources with information on 1U84
  • Community annotation for 1U84 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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