1U8C Cell Adhesion date Aug 05, 2004
title A Novel Adaptation Of The Integrin Psi Domain Revealed From Crystal Structure
authors J.P.Xiong, T.Stehle, S.L.Goodman, M.A.Arnaout
compound source
Molecule: Integrin Alpha-V
Chain: A
Fragment: Residues 31-987
Synonym: Vitronectin Receptor Alpha Subunit, Cd51 Antigen
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgav, Vnra
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Integrin Beta-3
Chain: B
Fragment: Residues 27-718
Synonym: Platelet Membrane Glycoprotein Iiia, Gpiiia, Cd61
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgb3, Gp3a
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 32 2 1
R_factor 0.293 R_Free 0.367
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.000 130.000 307.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.10 Å
ligand CA, NAG, NDG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • positive regulation of cytos...

  • B
  • smooth muscle cell migration...

  • Primary referenceA novel adaptation of the integrin PSI domain revealed from its crystal structure., Xiong JP, Stehle T, Goodman SL, Arnaout MA, J Biol Chem 2004 Sep 24;279(39):40252-4. Epub 2004 Aug 06. PMID:15299032
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (1u8c.pdb1.gz) 247 Kb
  • LPC: Ligand-Protein Contacts for 1U8C
  • CSU: Contacts of Structural Units for 1U8C
  • Likely Quarternary Molecular Structure file(s) for 1U8C
  • Retrieve 1U8C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U8C from S2C, [Save to disk]
  • View 1U8C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U8C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1U8C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u8ca4, region A:1-438 [Jmol] [rasmolscript] [script source]
        - Domain d1u8ca1, region A:439-598 [Jmol] [rasmolscript] [script source]
        - Domain d1u8ca2, region A:599-737 [Jmol] [rasmolscript] [script source]
        - Domain d1u8ca3, region A:738-956 [Jmol] [rasmolscript] [script source]
        - Domain d1u8cb6, region B:1001-1057 [Jmol] [rasmolscript] [script source]
        - Domain d1u8cb1, region B:1058-1106,B:1355-1434 [Jmol] [rasmolscript] [script source]
        - Domain d1u8cb2, region B:1107-1354 [Jmol] [rasmolscript] [script source]
        - Domain d1u8cb4, region B:1532-1562 [Jmol] [rasmolscript] [script source]
        - Domain d1u8cb5, region B:1563-1605 [Jmol] [rasmolscript] [script source]
        - Domain d1u8cb3, region B:1606-1690 [Jmol] [rasmolscript] [script source]
  • Fold representative 1u8c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u8c_A] [1u8c] [1u8c_B]
  • SWISS-PROT database: [P06756] [P05106]
  • Belongs to the integrin (integrin) family according to TCDB.
  • Domain organization of [ITAV_HUMAN] [ITB3_HUMAN] by SWISSPFAM
  • Domains found in 1U8C: [INB] [Int_alpha] [Integrin_B_tail] [PSI] [VWA ] by SMART
  • Other resources with information on 1U8C
  • Community annotation for 1U8C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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