1U9U Electron Transport date Aug 11, 2004
title Crystal Structure Of F58y Mutant Of Cytochrome B5
authors L.Shan, J.X.Lu, J.H.Gan, Y.H.Wang, Z.X.Huang, Z.X.Xia
compound source
Molecule: Cytochrome B5
Chain: A
Fragment: Trypsin-Solubilized Fragment
Engineered: Yes
Mutation: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pu19
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.515 40.405 39.300 90.00 111.70 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand HEM enzyme
related structures by homologous chain: 1LR6, 1M2M
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the F58W mutant of cytochrome b5: the mutation leads to multiple conformations and weakens stacking interactions., Shan L, Lu JX, Gan JH, Wang YH, Huang ZX, Xia ZX, Acta Crystallogr D Biol Crystallogr. 2005 Feb;61(Pt 2):180-9. Epub 2005, Jan 19. PMID:15681869
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (1u9u.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 1U9U
  • CSU: Contacts of Structural Units for 1U9U
  • Likely Quarternary Molecular Structure file(s) for 1U9U
  • Structure Factors (138 Kb)
  • Retrieve 1U9U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U9U from S2C, [Save to disk]
  • Re-refined 1u9u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1U9U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U9U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U9U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u9u_A] [1u9u]
  • SWISS-PROT database: [P00171]
  • Domain organization of [CYB5_BOVIN] by SWISSPFAM
  • Domain found in 1U9U: [Cyt-b5 ] by SMART
  • Other resources with information on 1U9U
  • Community annotation for 1U9U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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