1UA1 Transferase Dna date Aug 11, 2004
title Structure Of Aminofluorene Adduct Paired Opposite Cytosine At The Polymerase Active Site.
authors G.W.Hsu, J.R.Kiefer, O.J.Becherel, R.P.P.Fuchs, L.S.Beese
compound source
Molecule: Dna Primer Strand
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Dna Template Strand With Aminofluorene Adduct
Chain: C
Engineered: Yes
Other_details: See Remark 400

Synthetic: Yes

Molecule: Dna Polymerase I
Chain: A
Fragment: Analogous To The E. Coli Klenow Fragment
Synonym: Pol I
Ec: 2.7.7.7
Engineered: Yes
Other_details: See Remark 400

Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-30a(+)
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.639 93.441 105.465 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand AF, SO4 enzyme Transferase E.C.2.7.7.7 BRENDA
related structures by homologous chain: 1NJZ, 1U45
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceObserving translesion synthesis of an aromatic amine DNA adduct by a high-fidelity DNA polymerase., Hsu GW, Kiefer JR, Burnouf D, Becherel OJ, Fuchs RP, Beese LS, J Biol Chem 2004 Nov 26;279(48):50280-5. Epub 2004 Sep 22. PMID:15385534
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (1ua1.pdb1.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 1UA1
  • CSU: Contacts of Structural Units for 1UA1
  • Likely Quarternary Molecular Structure file(s) for 1UA1
  • Structure Factors (625 Kb)
  • Retrieve 1UA1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UA1 from S2C, [Save to disk]
  • Re-refined 1ua1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UA1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UA1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UA1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f1ua1, region A:2-147 [Jmol] [rasmolscript] [script source]
        - Domain d1u1ua1, region A:2-395 [Jmol] [rasmolscript] [script source]
        - Domain d1ua1a1, region A:297-468 [Jmol] [rasmolscript] [script source]
        - Domain d1s1ua1, region A:430-539 [Jmol] [rasmolscript] [script source]
        - Domain d1ua1a2, region A:469-876 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ua1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ua1_C] [1ua1_B] [1ua1] [1ua1_A]
  • SWISS-PROT database: [P52026]
  • Domain organization of [DPO1_BACST] by SWISSPFAM
  • Domains found in 1UA1: [35EXOc] [POLAc ] by SMART
  • Other resources with information on 1UA1
  • Community annotation for 1UA1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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