1UB1 Transcription date Mar 27, 2003
title Solution Structure Of The Matrix Attachment Region-Binding D Chicken Mecp2
authors B.Heitmann, T.Maurer, J.M.Weitzel, W.H.Stratling, H.R.Kalbitzer, E.Brunner, Structural Proteomics In Europe (Spine)
compound source
Molecule: Attachment Region Binding Protein
Chain: A
Fragment: Matrix Attachment Region-Binding Domain
Synonym: Mecp2
Engineered: Yes
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Carbp-Ex4.2
methodSolution NMR
related structures by homologous chain: 1QK9
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the matrix attachment region-binding domain of chicken MeCP2., Heitmann B, Maurer T, Weitzel JM, Stratling WH, Kalbitzer HR, Brunner E, Eur J Biochem 2003 Aug;270(15):3263-70. PMID:12869202
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (326 Kb) [Save to disk]
  • Biological Unit Coordinates (1ub1.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 1UB1
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1UB1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UB1 from S2C, [Save to disk]
    • View 1UB1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UB1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UB1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ub1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f1ub1, region B:3-147 [Jmol] [rasmolscript] [script source]
        - Domain d1s1ub1, region B:5-428 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ub1] [1ub1_A]
  • SWISS-PROT database: [O42403]
  • Domain organization of [O42403_CHICK] by SWISSPFAM
  • Domain found in 1UB1: [MBD ] by SMART
    • Other resources with information on 1UB1
  • Community annotation for 1UB1 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science