1UCH Cysteine Protease date Oct 06, 1997
title Deubiquitinating Enzyme Uch-L3 (Human) At 1.8 Angstrom Resolution
authors S.C.Johnston, C.N.Larsen, W.J.Cook, K.D.Wilkinson, C.P.Hill
compound source
Molecule: Ubiquitin C-Terminal Hydrolase Uch-L3
Chain: A
Synonym: Uch-L3,Dub
Ec: 3.1.2.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: B834 (De3)
Tissue: Hematopoetic
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_variant: Gal-Met- Auxotroph
Expression_system_cell_line: B834 (De3)
Expression_system_plasmid: Prsl3
symmetry Space Group: P 21 21 21
R_factor 0.232 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.600 60.900 81.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Hydrolase E.C.3.1.2.15 BRENDA
related structures by homologous chain: 1XD3
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a deubiquitinating enzyme (human UCH-L3) at 1.8 A resolution., Johnston SC, Larsen CN, Cook WJ, Wilkinson KD, Hill CP, EMBO J 1997 Jul 1;16(13):3787-96. PMID:9233788
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1uch.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1UCH
  • Likely Quarternary Molecular Structure file(s) for 1UCH
  • Structure Factors (154 Kb)
  • Retrieve 1UCH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UCH from S2C, [Save to disk]
  • Re-refined 1uch structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UCH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UCH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UCH, from MSDmotif at EBI
  • Genome occurence of 1UCH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uch__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1uch from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uch] [1uch_A]
  • SWISS-PROT database: [P15374]
  • Domain organization of [UCHL3_HUMAN] by SWISSPFAM
  • Other resources with information on 1UCH
  • Community annotation for 1UCH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1UCH from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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