1UCP Apoptosis date Apr 16, 2003
title Nmr Structure Of The Pyrin Domain Of Human Asc
authors E.Liepinsh, R.Barbals, E.Dahl, A.Sharipo, E.Staub, G.Otting
compound source
Molecule: Apoptosis-Associated Speck-Like Protein Containing A Card;
Chain: A
Fragment: Pyrin Domain
Synonym: Pycard, Asc
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Lymphocytes
Gene: Asc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe death-domain fold of the ASC PYRIN domain, presenting a basis for PYRIN/PYRIN recognition., Liepinsh E, Barbals R, Dahl E, Sharipo A, Staub E, Otting G, J Mol Biol 2003 Oct 3;332(5):1155-63. PMID:14499617
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (480 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1UCP
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1UCP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UCP from S2C, [Save to disk]
  • View 1UCP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UCP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UCP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ucpa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ucp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ucp_A] [1ucp]
  • SWISS-PROT database: [Q9ULZ3]
  • Domain organization of [ASC_HUMAN] by SWISSPFAM
  • Domain found in 1UCP: [PYRIN ] by SMART
  • Other resources with information on 1UCP
  • Community annotation for 1UCP at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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