1UDL Endocytosis Exocytosis date May 01, 2003
title The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256)
authors A.Goroncy, T.Kigawa, S.Koshiba, N.Kobayashi, N.Tochio, M.Inoue, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Intersectin 2
Chain: A
Fragment: Sh3 Domain
Synonym: Kiaa1256
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Hh15293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P021015-68
Other_details: Cell-Free Synthesis System
methodSolution NMR
related structures by homologous chain: 1UE9

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (480 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1UDL
  • Original NMR restraints for 1UDL from PDB
  • Retrieve 1UDL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UDL from S2C, [Save to disk]
  • View 1UDL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UDL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UDL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1udla_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1udl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1udl] [1udl_A]
  • SWISS-PROT database: [Q9NZM3]
  • Domain organization of [ITSN2_HUMAN] by SWISSPFAM
  • Domain found in 1UDL: [SH3 ] by SMART
  • Other resources with information on 1UDL
  • Community annotation for 1UDL at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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