1UDO	Transferase	date	May 02, 2003
title	Crystal Structure Of The Trna Processing Enzyme Rnase Ph R86 From Aquifex Aeolicus
authors	R.Ishii, O.Nureki, S.Yokoyama, Riken Structural Genomicsproteo Initiative (Rsgi)
compound		source
Molecule: Ribonuclease Ph Chain: A Synonym: Rnase Ph Ec: 2.7.7.56 Engineered: Yes Mutation: Yes		Organism_scientific: Aquifex Aeolicus Organism_taxid: 63363 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26b
symmetry	Space Group: P 63 2 2	R_factor 0.225 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 144.995 144.995 82.858 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	PO4, SO4	enzyme	Transferase E.C.2.7.7.56 BRENDA
related structures	by homologous chain: 1UDQ, 1UDS
Gene Ontology	Chain Function Process Component A 3'-5'-exoribonuclease activi...
Primary reference	Crystal structure of the tRNA processing enzyme RNase PH from Aquifex aeolicus., Ishii R, Nureki O, Yokoyama S, J Biol Chem 2003 Aug 22;278(34):32397-404. PMID:12746447

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (1udo.pdb1.gz) 246 Kb LPC: Ligand-Protein Contacts for 1UDO CSU: Contacts of Structural Units for 1UDO Likely Quarternary Molecular Structure file(s) for 1UDO Retrieve 1UDO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UDO from S2C, [Save to disk]

View 1UDO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UDO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UDO, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1udoa2, region A:151-255 [Jmol] [rasmolscript] [script source]     - Domain d1udoa1, region A:2-150 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1udo_A] [1udo] SWISS-PROT database: [O67069] Domain organization of [RNPH_AQUAE] by SWISSPFAM

Other resources with information on 1UDO

Community annotation for 1UDO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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