1UF9 Structural Genomics, Unknown Function date May 28, 2003
title Crystal Structure Of Tt1252 From Thermus Thermophilus
authors A.Seto, K.Murayama, M.Toyama, A.Ebihara, N.Nakagawa, S.Kuramitsu, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Tt1252 Protein
Chain: A, B, C
Fragment: Nucleotide Binding Domain
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 32
R_factor 0.222 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.120 102.120 65.670 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand ATP, MSE, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceATP-induced structural change of dephosphocoenzyme A kinase from Thermus thermophilus HB8., Seto A, Murayama K, Toyama M, Ebihara A, Nakagawa N, Kuramitsu S, Shirouzu M, Yokoyama S, Proteins 2005 Jan 1;58(1):235-42. PMID:15526298
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (1uf9.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (1uf9.pdb2.gz) 32 Kb
  • Biological Unit Coordinates (1uf9.pdb3.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 1UF9
  • CSU: Contacts of Structural Units for 1UF9
  • Likely Quarternary Molecular Structure file(s) for 1UF9
  • Retrieve 1UF9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UF9 from S2C, [Save to disk]
    • View 1UF9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UF9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UF9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uf9a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1uf9b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1uf9c_, region C [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uf9_A] [1uf9_C] [1uf9] [1uf9_B]
  • SWISS-PROT database: [Q56416]
  • Domain organization of [COAE_THET8] by SWISSPFAM
    • Other resources with information on 1UF9
  • Community annotation for 1UF9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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