1UFB Structural Genomics, Unknown Function date May 28, 2003
title Crystal Structure Of Tt1696 From Thermus Thermophilus Hb8
authors M.Idaka, K.Murayama, H.Yamaguchi, T.Terada, S.Kuramitsu, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Tt1696 Protein
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: C 2 2 21
R_factor 0.187 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.080 134.326 123.066 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (1ufb.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (1ufb.pdb2.gz) 43 Kb
  • Biological Unit Coordinates (1ufb.pdb3.gz) 85 Kb
  • Biological Unit Coordinates (1ufb.pdb4.gz) 86 Kb
  • CSU: Contacts of Structural Units for 1UFB
  • Likely Quarternary Molecular Structure file(s) for 1UFB
  • Retrieve 1UFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UFB from S2C, [Save to disk]
    • View 1UFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UFB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UFB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ufba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ufbb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ufbc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ufbd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ufb_D] [1ufb_B] [1ufb_C] [1ufb_A] [1ufb]
  • SWISS-PROT database: [P83963]
  • Domain organization of [P83963_THETH] by SWISSPFAM
  • Domain found in 1UFB: [HEPN ] by SMART
    • Other resources with information on 1UFB
  • Community annotation for 1UFB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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